The Leifer Institute for Molecular and Digital Pathology

The Leifer Institute for Molecular and Digital PathologyThe Leifer Institute for Molecular and Digital PathologyThe Leifer Institute for Molecular and Digital Pathology

(732) 415-8371

  • Home
  • History and Background
  • Projects Overview
  • Ligands
  • LigandsList
    • Outline
    • Secondary Structure
    • Z-DNA
    • G-quadruplexes
    • i-motifs
    • Cruciform DNA
    • Triple Stranded DNA
    • Tertiary Structure
    • Curvature
    • Twisting
    • Stretching
    • Supercoiling
    • Ligands and Mechanism
    • Binding to Bases
    • Intercalation
    • Enantiomers
    • Natural ligands
    • Metals
    • Antitumor Drugs
  • Pressure
  • MCS
    • Introduction
    • Research
    • Articles
    • Videos
    • Resources
  • Regulogenesis
  • 3D
  • Virtual Lab
  • Data Mining
  • Wiki Use
  • Foldscope
  • Gallery
  • Personal
    • Publications
  • Slide 10
  • More
    • Home
    • History and Background
    • Projects Overview
    • Ligands
    • LigandsList
      • Outline
      • Secondary Structure
      • Z-DNA
      • G-quadruplexes
      • i-motifs
      • Cruciform DNA
      • Triple Stranded DNA
      • Tertiary Structure
      • Curvature
      • Twisting
      • Stretching
      • Supercoiling
      • Ligands and Mechanism
      • Binding to Bases
      • Intercalation
      • Enantiomers
      • Natural ligands
      • Metals
      • Antitumor Drugs
    • Pressure
    • MCS
      • Introduction
      • Research
      • Articles
      • Videos
      • Resources
    • Regulogenesis
    • 3D
    • Virtual Lab
    • Data Mining
    • Wiki Use
    • Foldscope
    • Gallery
    • Personal
      • Publications
    • Slide 10

The Leifer Institute for Molecular and Digital Pathology

The Leifer Institute for Molecular and Digital PathologyThe Leifer Institute for Molecular and Digital PathologyThe Leifer Institute for Molecular and Digital Pathology

(732) 415-8371

  • Home
  • History and Background
  • Projects Overview
  • Ligands
  • LigandsList
    • Outline
    • Secondary Structure
    • Z-DNA
    • G-quadruplexes
    • i-motifs
    • Cruciform DNA
    • Triple Stranded DNA
    • Tertiary Structure
    • Curvature
    • Twisting
    • Stretching
    • Supercoiling
    • Ligands and Mechanism
    • Binding to Bases
    • Intercalation
    • Enantiomers
    • Natural ligands
    • Metals
    • Antitumor Drugs
  • Pressure
  • MCS
    • Introduction
    • Research
    • Articles
    • Videos
    • Resources
  • Regulogenesis
  • 3D
  • Virtual Lab
  • Data Mining
  • Wiki Use
  • Foldscope
  • Gallery
  • Personal
    • Publications
  • Slide 10

natural ligands

  

Naturally-occurring DNA-binding ligands

Ligand: Spermidine  


Effect on DNA structure: Affects bending    


Reference(s): Feuerstein, B.G., Pattabiraman and Marton, L.J. Molecular Mechanics of the Interactions of Spermine with DNA: DNA bending as a result of ligand binding. Nucleic Acids Res. 18(5):1271-1282 (1990) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC330444/   


Ligand: Spermidine and Spermine  


Effect on DNA structure: Increase writhing and limit twisting  


Reference(s): Shao, Q., Goyal S., Finzi, L. and Dunlap, D. Physiological Levels of Salt and Polyamines favor writhe and limit twist in DNA. Macromolecules 45(7):3188-3196 (2012) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3601208/ 


Ligand: Spermine (vs. others)


Effect on DNA structure: Decrease binding of antinuclear antibodies


Reference: Wang, X., Stearns, N.A., Xingfu, L. and Pisetsky, D.S.  The Effect of Polyamines on the Binding of Anti-DNA Antibodies for Patients with SLE and Normal Human Subjects. Clinical Immunology 153(1):94-103 (2014)

https://www.sciencedirect.com/science/article/abs/pii/S1521661614000886?via%3Dihub




 

Leifer Inst for Molecular and Digital Pathology

(732) 415-8371

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